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4: Butt SL, Kariithi HM, Volkening JD, Taylor TL, Leyson C, Pantin-Jackwood M, Suarez DL, Stanton JB, Afonso CL. Comparable outcomes from long and short read random sequencing of total RNA for detection of pathogens in chicken respiratory samples. Front Vet Sci. 2022 Dec 1;9:1073919. doi: 10.3389/fvets.2022.1073919. PMID: 36532355; PMCID: PMC9751482.

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11: Kariithi HM, Christy N, Decanini EL, Lemiere S, Volkening JD, Afonso CL, Suarez DL. Detection and Genome Sequence Analysis of Avian Metapneumovirus Subtype A Viruses Circulating in Commercial Chicken Flocks in Mexico. Vet Sci. 2022 Oct 19;9(10):579. doi: 10.3390/vetsci9100579. PMID: 36288192; PMCID: PMC9612082.

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13: Kariithi HM, Volkening JD, Alves VV, Reis-Cunha JL, Arantes LCRV, Fernando FS, Filho TF, da Silva Martins NR, Lemiere S, de Freitas Neto OC, Decanini EL, Afonso CL, Suarez DL. Complete Genome Sequences of Avian Metapneumovirus Subtype B Vaccine Strains from Brazil. Microbiol Resour Announc. 2023 Jun 20;12(6):e0023523. doi: 10.1128/mra.00235-23. Epub 2023 May 10. PMID: 37162354; PMCID: PMC10281098.

14: Kariithi HM, Volkening JD, Chiwanga GH, Pantin-Jackwood MJ, Msoffe PLM, Suarez DL. Genome Sequences and Characterization of Chicken Astrovirus and Avian Nephritis Virus from Tanzanian Live Bird Markets. Viruses. 2023 May 25;15(6):1247. doi: 10.3390/v15061247. PMID: 37376547; PMCID: PMC10302499.

15: Kariithi HM, Volkening JD, Chiwanga GH, Goraichuk IV, Msoffe PLM, Suarez DL. Molecular Characterization of Complete Genome Sequence of an Avian Coronavirus Identified in a Backyard Chicken from Tanzania. Genes (Basel). 2023 Sep 23;14(10):1852. doi: 10.3390/genes14101852. PMID: 37895200; PMCID: PMC10606662. 16: Kariithi HM, Volkening JD, Chiwanga GH, Goraichuk IV, Olivier TL, Msoffe PLM, Suarez DL. Virulent Newcastle disease virus genotypes V.3, VII.2, and XIII.1.1 and their coinfections with infectious bronchitis viruses and other avian pathogens in backyard chickens in Tanzania. Front Vet Sci. 2023 Oct 19;10:1272402. doi: 10.3389/fvets.2023.1272402. PMID: 37929287; PMCID: PMC10625407.

17: Kariithi HM, Volkening JD, Afonso CL, Helmy M, Chaudhari PP, Decanini EL. Coding-complete genome sequence of a GI-13 infectious bronchitis virus from commercial chicken in India. Microbiol Resour Announc. 2025 Mar 11;14(3):e0114224. doi: 10.1128/mra.01142-24. Epub 2025 Jan 27. PMID: 39868773; PMCID: PMC11895471.

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21: Sharma P, Killmaster LF, Volkening JD, Cardenas-Garcia S, Wajid A, Rehmani SF, Basharat A, Miller PJ, Afonso CL. Draft Genome Sequences of Three Ochrobactrum spp. Isolated from Different Avian Hosts in Pakistan. Genome Announc. 2018 Apr 12;6(15):e00269-18. doi: 10.1128/genomeA.00269-18. PMID: 29650578; PMCID: PMC5897816.

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26: Spatz S, García M, Fuchs W, Loncoman C, Volkening J, Ross T, Riblet S, Kim T, Likens N, Mettenleiter T. Reconstitution and Mutagenesis of Avian Infectious Laryngotracheitis Virus from Cosmid and Yeast Centromeric Plasmid Clones. J Virol. 2023 Apr 27;97(4):e0140622. doi: 10.1128/jvi.01406-22. Epub 2023 Apr 6. PMID: 37022163; PMCID: PMC10134816.

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28: Taylor TL, Volkening JD, DeJesus E, Simmons M, Dimitrov KM, Tillman GE, Suarez DL, Afonso CL. Rapid, multiplexed, whole genome and plasmid sequencing of foodborne pathogens using long-read nanopore technology. Sci Rep. 2019 Nov 8;9(1):16350. doi: 10.1038/s41598-019-52424-x. PMID: 31704961; PMCID: PMC6841976.

29: Volkening JD, Spatz SJ. Identification and characterization of the genomic termini and cleavage/packaging signals of gallid herpesvirus type 2. Avian Dis. 2013 Jun;57(2 Suppl):401-8. doi: 10.1637/10410-100312-Reg.1. PMID: 23901753. 30: Volkening JD, Spatz SJ, Ponnuraj N, Akbar H, Arrington JV, Vega-Rodriguez W, Jarosinski KW. Viral proteogenomic and expression profiling during productive replication of a skin-tropic herpesvirus in the natural host. PLoS Pathog. 2023 Jun 8;19(6):e1011204. doi: 10.1371/journal.ppat.1011204. PMID: 37289833; PMCID: PMC10284419.

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